rs38534443 SNP Detail

Summary

• ID
  rs38534443
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26323552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATGGA CAAAGAAGAG
  AGACAGAAGG GAGGAACCAG AAATGAGGAG AAAATAAAAG AGAAGGGAGA AGAGGAGGGA
  GGAGGGAAAG AGGGAGGGAG AGAAGGGAGG AGAGAGGAAG GAAGAAAGAG AAAAGCAGCC
  AGTGTAATAA TAACTCTGTA TCTCTAGATG ACTGAGGTTA GAATGGATAT TTTAACTTTT
  M
  TTTATATGTG TCCATTTTCA AAATGTTTAA TGATAGTAAC ACATGCTTTT AAAAGTCAAT
  ATATATGCTA TAAGAATAAA GAAGGCAATA AATATTCTAA TTCAGTTTTG AAAGTTTATC
  ATATAAAAAC TTGTTGAGTT TTTGTAAATG CCAGTGCTTA AATCTGTAAG CTTTGTTTAT
  TAGAAAAAAT AGTTGCATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51445370	NES14436729	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38534443					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51445370	NES14436729	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26323552 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574313	regulatory region 574313	1628 bp proximal