rs38530050 SNP Detail

Summary

• ID
  rs38530050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:72974860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCACAAGGT GCATAGTCTT ATAAATATGG ATGCTTTCCA
  TCCAGGGTTG TATGTGATGT TCCTGGTAGT TTTAACAGGA GAGTTATGAC TGTGAGTTTA
  Y
  GTGACAAACA AACCAGAAAA GTGAAACACG CAAAGGTTCA GAAATACGTG TTAACAAGTG
  AGGCTGGAAT TACTTATTAT CGTTACTCTA ACTTTGAGTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50986068	NES13919717	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38530050					SNP	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50986068	NES13919717	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:72974860 () rs orientation: forward

Symbol	Name	Function Class
Gm20754	predicted gene, 20754	within coordinates
Gm38353	predicted gene, 38353	within coordinates
Rr578299	regulatory region 578299	1166 bp distal
Rr578300	regulatory region 578300	1232 bp distal
Rr578301	regulatory region 578301	863 bp distal
Tssr29555	transcription start site region 29555	1198 bp downstream
Tssr29556	transcription start site region 29556	1183 bp downstream
Tssr29557	transcription start site region 29557	1168 bp downstream