rs38526682 SNP Detail

Summary

• ID
  rs38526682
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86848731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGG AAGGAGCAGG ATCACCCTGT
  S
  TAGACTGTTT CTTCTAGAAG TTTGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss51748759	NES14798546	PERLEGEN	MM_PANEL2	f	SNP	G			C			C	G	C
ss133360199	ENSMUSSNP989746	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss321847606	CHEV_6_86821743	CHEVERUD	SCREENING_POP	f	SNP						C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs38526682					SNP	G	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51748759	NES14798546	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86848731 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Intron
				Noncoding-Transcript-Variant
Rr633547	regulatory region 633547			981 bp distal
Rr633548	regulatory region 633548			14 bp proximal
Tssr57515	transcription start site region 57515			936 bp downstream