rs38526002 SNP Detail

Summary

• ID
  rs38526002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143914367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTACTCT GCCATCAGAG
  AGATCCTTAG AACTCCAAAG GTCCAGTAGA GTTGCCATAG TGAGGGAACT AAACACTAAG
  GTAGACTAGC TGGTGGGTTG CGTTTCTCTA GGCTGGGTGT GCGGCACACA GTGCAGTAAC
  TAGGACCCAG GAACGCTGAA GCTTGTAAGA ATAGGAGTTA AAACTGAACA GGTTTTGATA
  Y
  TGCTCATCCG TGCCTATTAT CCCAGACACT TGGGAGTCTG AGGAAGGAAG ACCGCTTGAC
  CTGGGAAATT TGTAGCCACC AAGACCCTCA AAAGGGGAAA GAAGAGGAAT GAAAACAGGA
  AGAAGGGAAA AGCAAGGCGG GAACTAGGGA ATATAACTCA GTTGGTCGAG CGTTGGTACC
  GCAGGTATGA TCCGGAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51655460	NES14643433	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38526002					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51655460	NES14643433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143914367 () rs orientation: forward

Symbol	Name	Function Class
Rr586603	regulatory region 586603	676 bp distal