rs38521403 SNP Detail

Summary

• ID
  rs38521403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65811046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGGGAG TGGACAACTT
  GTGGAAGTTG GTTCTCTCCA TTTCAAACTC AGCTCATTAG GCTTGGCAGC AGAAACATTT
  ACTCACTGCC TTGTTACATT TATCTGTCTG TCTGTCTGTC TGTCTGTCTG TCTGTTTATG
  AGACAGACTC AGAATCATGG GGATGGGTGT TTCACTTGGG GATTGGAGGA TGGGTGGTGT
  R
  AGCTTCAGGT GGCCTGGAGG ATCTGCCCCC TCTGTCTAAT CCAATCAGCC TCCTGCTTAT
  CAGCTCACCC AGCGTCCCAC AGTCTCTGTG CAGGAGTCTG CCATGCTCAT ATCCCTCCTG
  ACCTCTGAAC ACTAAGCCGT GCTTGCTTTG TTCCCAACCC CTCATCCCGG GCGTCGCCTG
  TGGTTACTCG GTAGCCTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50442048	NES13440371	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38521403					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50442048	NES13440371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65811046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D18Mit161	DNA segment, Chr 18, Massachusetts Institute of Technology 161			175 bp distal
Rr539588	regulatory region 539588			1268 bp proximal
Zfp532	zinc finger protein 532			Intron
				Noncoding-Transcript-Variant