rs38519287 SNP Detail

Summary

• ID
  rs38519287
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96982057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA TCCCTGGAGC TCAGTGCGTC
  W
  CACACATACT CATTCTACTC ACATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss51918044	NES14941044	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs38519287					SNP	A	A	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51918044	NES14941044	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96982057 () rs orientation: forward

Symbol	Name	Function Class
Kctd21	potassium channel tetramerisation domain containing 21	Intron
Rr400445	regulatory region 400445	458 bp downstream
Rr651402	regulatory region 651402	841 bp distal
Rr651403	regulatory region 651403	513 bp distal
Rr651404	regulatory region 651404	517 bp distal
Rr651405	regulatory region 651405	within coordinates
Tssr67964	transcription start site region 67964	519 bp downstream
Tssr67965	transcription start site region 67965	199 bp downstream
Tssr73573	transcription start site region 73573	755 bp upstream
Tssr73574	transcription start site region 73574	736 bp upstream
Tssr73575	transcription start site region 73575	708 bp upstream
Usp35	ubiquitin specific peptidase 35	830 bp upstream