rs38513533 SNP Detail

Summary

• ID
  rs38513533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51112388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGAAATT TTTTAAGCTT
  AGGGGAATAT GAGCCTGTGT TGTTCCAGTC CCCACTATCG ATAAAGATTC ACTTGTGTGG
  CTCTAGTAAG AAAGAAAGCA CTTTGCAGAA TCGTGGAAAC TCAAAAACTC CCTTAGCTGC
  AGGACTAAGT GGAGGCTCTG GCCCCGCTGC TAACAACCCG ATGTTTCTAA GGACACCGAC
  R
  TTGCTGCATC AGTTTCAGAA GCCTGTCTGC TGCCGCCATA TGTCAGTCAC CATAAAAGTT
  CCCGGTTTCC CTAGAGACAG CCGCAACTGC TGACCACCTG TGCTGCTTAT CACAGCACAG
  CTTCACAAGT CATCATTGAG CGGTCAAGCT CTGTATTTTT AATTAAAAAT TAACCACAGT
  GCTGAGCCAC CGGATAATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51524057	NES14689629	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38513533					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51524057	NES14689629	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51112388 () rs orientation: forward

Symbol	Name	Function Class
Rr576237	regulatory region 576237	1906 bp distal
Rr576238	regulatory region 576238	770 bp distal
Rr576239	regulatory region 576239	301 bp distal
Rr576240	regulatory region 576240	1618 bp proximal