rs38509913 SNP Detail

Summary

• ID
  rs38509913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97716697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCCTCT GCCTCCTTGG
  TAAGGAGATT GCAGGCAGGT GCATCTCACC TCAGTTTTTA ATTTTATTTT TATCTGTTTG
  TTAGTTCTTA AAGGAAAGAT TAAGGAGATT TGTGGCAGAA ACACTCCAAT TTTTGTTTGG
  CACACAAGTC AATTGAATTG AAATAATAAC AAAATCGATT GGGGATGTTA TTGAAGATTC
  R
  TGCCTGTAAA AGAATTGAGA GAATGCCTCT GTTCAATCAG CTTTAAAAAG AAAAAAAGCT
  GTTCTTAGGG TTGGTCAGCT GGCTATGCTG TAAAGTGACT GCCATAAAAC AAGGAGGACC
  TGAGTTCAAT TCCAAGCACA CAATAAAAAA GCAACAGTGT GTGCCCTGCC AGCCGAGTCA
  GCTCTGGGGG AGACAATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51376253	NES13728237	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs38509913					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51376253	NES13728237	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97716697 () rs orientation: forward

Symbol	Name	Function Class
Rr399782	regulatory region 399782	476 bp upstream
Rr635214	regulatory region 635214	345 bp proximal
Rr635215	regulatory region 635215	572 bp proximal
Rr635216	regulatory region 635216	861 bp proximal