rs38507195 SNP Detail

Summary

• ID
  rs38507195
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112470046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTTCTC TAACTTGGCC
  TGCATCTGAA CAACAGAGTC AGTCAGACAC TCACAGCCTC CTGGTTTAAT CTCTCAGTAT
  GTGTGGAAAG CAGGCAAAGA AGAGAGGCTC TGCTTGCCTA GTGACCTCCT CTGAAGGTCC
  CTGGGGAAGG AGAAGGCACA CACTGGCATC CTTGAATCCT AGCCAGAGAG AAAGACGCCT
  K
  TCTATTTCAG TGTAGTGAGG ATGCATTCTA ACAAAAGGTG GGCAAAGCAC TTGGTCCTAG
  AGAGATCGCA GGAGGTAGTT TCACCAAGGA AGTCATTGTC CTGGGATCAA AGATGACAGG
  AGTCCTTCCC TGAAATGCCA GTGGAGTGGG GTGGGCATTG GTGATCCCAC GTGGATGTGA
  TGAAGTGTTG TCAACTTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51849197	NES14775867	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38507195					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51849197	NES14775867	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112470046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17823	CpG island 17823	1932 bp distal
Rr636353	regulatory region 636353	1977 bp distal
Rr636354	regulatory region 636354	1416 bp proximal
Rr636355	regulatory region 636355	1838 bp proximal