rs38506459 SNP Detail

Summary

• ID
  rs38506459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130909326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGATGCCC AATATGAACA
  GCGACCCGTA CATGTCAAAT GGGTCCCTTT CTCCACCCAT CCCGAGGACA GTGAGTAACA
  TGCTGATGTT GAAAATTATT CTCAGACGTG CAAATTAATT TGTGTTTCAA CAGAATGCTT
  ATTTCCTCAA ACGCACTGCC CAAGGCATCC TTGCATGAGA CTTAGTCATC CCATCGTTCC
  R
  TAAGAGCTGT GCGTGGAGTG GCAGCCTGAG AACAGTGCTG GTTTTATGTC TCCCGTTTGG
  ATTTTTAGAT TTAGGCTGAG ATGAATGAAG TAGAGATTCA TGAGTTACGA AATCAAATGG
  AGCCAAGTCG GAGGAGCCAT GATAAAATAT ATATAAAATA TATATATATA TATTCTGTGT
  TTCTGTGCTG ATGAGTGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51635315	NES14651378	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38506459					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51635315	NES14651378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130909326 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lef1	lymphoid enhancer binding factor 1			Intron
				Noncoding-Transcript-Variant
Lef1os1	LEF1 opposite strand RNA 1			1714 bp upstream
Rr585272	regulatory region 585272			393 bp proximal
Rr585273	regulatory region 585273			1676 bp proximal
Tssr31704	transcription start site region 31704			1812 bp downstream
Tssr31705	transcription start site region 31705			1785 bp downstream