rs38501744 SNP Detail

Summary

• ID
  rs38501744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21991665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGGGCC TAGTTCACCC
  CACTCTCCTA CCTTGCCCTA AAGGATTAGC CTAGGATCCT AATGCTGACA TATTTTAATC
  CAATCAGAAG CCTTCTTAGG GAACTAGAAA CTGGAAGTGT AAAAGACAAC TCCCTAGGCA
  GAAACTGAAA AAAATTAAAA AGTTCAATGT GACCCCATTT CCTGGCCTAA TGCAGGAGAG
  R
  CCAACCAGTA TGAAGACAGA GATAGTCAGA GAAGGAAACA AGAACAAAGC CGAGAAGCCA
  GCAGGTTGTG GGTCACAATT GTGACCTTGC TATAGCCCTC CCTGCCTCAT ATTCCTTGTG
  GCAGCCTAGT TTGTTTGTTT GTTTGTTTTT AACACATGAA TGTCTCCTTA TTGTTTAACT
  TAATTTATAT CTGAGTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51434356	NES14437053	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38501744					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434356	NES14437053	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21991665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13011	CpG island 13011	1198 bp distal
Gm31813	predicted gene, 31813	within coordinates
Gm64857	predicted gene, 64857	388 bp downstream
Gm64860	predicted gene, 64860	1461 bp upstream
Rr367415	regulatory region 367415	within coordinates
Rr574165	regulatory region 574165	1472 bp distal
Rr574166	regulatory region 574166	1231 bp distal
Rr574167	regulatory region 574167	92 bp distal
Rr574168	regulatory region 574168	224 bp proximal
Tssr32751	transcription start site region 32751	1457 bp upstream