rs38500758 SNP Detail

Summary

• ID
  rs38500758
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97951509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATACTCTAT ATTAAATTGT GTCATTTTCC TTTGAAGTTG
  ATGTGCTTAA ACAGGGCAGT TTGTTCCCCT CCCACTTGAA GGAGCAGCTG TGACCTGACC
  W
  GGCCTTTGGT GACTTATCCC ATCCTAGCCT CCATGGCCTT TTTCTTGTGA CTATTGTTTA
  ATTTGCGATC TCAATCCCCA AATGTATGTT AGTTTTCTGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss51002314	NES13912244	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs38500758					SNP	A	A	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51002314	NES13912244	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97951509 () rs orientation: forward

Symbol	Name	Function Class
Notch2	notch 2	Intron
Rr581622	regulatory region 581622	190 bp distal
Rr581623	regulatory region 581623	508 bp proximal
Rr581624	regulatory region 581624	1374 bp proximal
Tssr30816	transcription start site region 30816	894 bp upstream