rs38499287 SNP Detail

Summary

• ID
  rs38499287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121889513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATCCATC CATCCATCCA
  TCCATCCATC CATCCATCTA TCCATCTATC CATCTATCCA TCTATCCATC TATCCATCTA
  TCTATCTATC TATCTATCTA TCTATTTATC TACCTATCTA TCTATCTATC TATCTATCTA
  TCTATCTATC TATCTATCTA CCTATCTACC TATCTATCTA TCTACCTATC TATCTTCTTT
  R
  TTGGTTAGCC ACAATTCAAT TCACTCTTTG TGAGTGAATG TTTCAGAAGC CTGTTCACAC
  TGCCTGATTT ATTCTTGCCT CTAATTCACC ATCCCAAACA ACCCAAATAG CCCAGAGTGA
  TTTTTACACC GTGGCTTTTT CCATGTAGTT GGAAATAAAT TGTGAAGGTT GCACTTTACA
  TCTGCCAGGA AACTAATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51022008	NES13908002	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38499287					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51022008	NES13908002	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121889513 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Rr584229	regulatory region 584229			710 bp distal
Rr584230	regulatory region 584230			984 bp proximal