rs38491705 SNP Detail

Summary

• ID
  rs38491705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113579618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCCCAGA AAATGGCAAG
  AGCATGTGTA GGGAGAAAGA AGTCACACAG GGAACAAAAG CAGAAAGGCT GGGCTGGGCT
  GGGCTGGGTT CAGGCTTTTG GAACCTCTGG TTCTGGAAAA CCAACTCCAG GAGCTGACAT
  TCTGTTCTCA AGGTGCTACC CCCAAAGAGA TGCATAAGTT AAAAATGTAA AAATTTTATA
  Y
  CTTGGTACTG AGTGGTTGTG GGGCATGCCT TTAATCTCAG CACTCTAGAA GCAGAGGCAG
  GTAGATCTCT GAGTTGGAGG CCAGCCTGAC CTACAAAGAT AAAGTGCCAC GGTGTTTTAG
  GTTTCCGTTG CTGTGAAGAG GCACCATGAC CAAGGCAACT CTTACAAAGG CAAACATTTA
  ATCAGGGCTG TCTTACGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51840387	NES14766167	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38491705					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51840387	NES14766167	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113579618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17850	CpG island 17850	1718 bp proximal
Fancd2os	Fancd2 opposite strand	1942 bp upstream
Gm67049	predicted gene, 67049	within coordinates
Gm67050	predicted gene, 67050	1677 bp downstream
Rr379958	regulatory region 379958	1278 bp downstream
Rr636546	regulatory region 636546	1953 bp distal
Rr636547	regulatory region 636547	1931 bp distal
Rr636548	regulatory region 636548	1577 bp distal
Rr636549	regulatory region 636549	1625 bp proximal
Rr636550	regulatory region 636550	1849 bp proximal
Tssr58229	transcription start site region 58229	1893 bp downstream