rs38491665 SNP Detail

Summary

• ID
  rs38491665
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101620747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATCCCCA CATGGCCACG
  GCCCTGGGAC AAGGAGCGGC TGGGGAGCCC CCCTGGGGGC TGAGTTCTGG AAGCCTCTGA
  GCCCAGGTTT GCATTCTTTT CCGGCAGCAA GACTGGCCCC TCCTGCAGTT TGAGTCACGT
  CCTGGTCTCC AGGGAGGAGA TGGGCTGCTT TTCTGCCGGA GGCACTGAAG AAAGCCAGAC
  K
  GAGTGTTTTC TTGTTTGTCT TTATCCACAA GATTTAAAAT TCCCAGACAG CATAATGACA
  CTGAAAAGAG AAAGGAGCAG AAATCACAGT TGCTCTGTCA CCGCCTGCTC CGTGATGCTG
  GCAAGTTGTT TAACTCCCCG GAGCTGCTTC TGTGACTGCG AAGAATGACT TCTCCATTGC
  CTCCCTGGGC TGTGTGCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51582593	NES14672082	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38491665					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51582593	NES14672082	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101620747 () rs orientation: forward

Symbol	Name	Function Class
Gm65392	predicted gene, 65392	within coordinates
Rr1547	regulatory region 1547	within coordinates
Rr375471	regulatory region 375471	within coordinates
Rr582112	regulatory region 582112	1409 bp distal
Rr582113	regulatory region 582113	954 bp distal
Rr582114	regulatory region 582114	within coordinates
Rr582115	regulatory region 582115	1067 bp proximal