rs38485562 SNP Detail

Summary

• ID
  rs38485562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:88936426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTCCAAA TATAGTATGA
  GGTGAGGATA TGTTGTGAAT GTGAAGTTTG AAGGAGACAC AATTAGTTTA GGGTGAGGGG
  GTTAAGGGGC TGGCCCCTGT GGCATGCAAG CGCCTGAGAT CCATGCTATT ACAGTTGCCA
  TCTTCAGGCT CTTGCCCCTT CTCCTGTGTG CTGTTTCCAA ATGACCTGAG ACATGTCTGC
  R
  TATTAGCAAT ATCTGCTGTG GCCTTGGGAG GGGAACTAGG ACTTGCATGC CAGGGTTTCC
  CTGGGCCTGT GGTTAGCTTC CCACCTGGGA ATCTGCAGGT CTGAAAAGCC TCTGAACCCA
  GCCTTCTGCT GCCTCCCCAT TGGCTGTCCT GACCATCACC TAATGAAAGG CAAGGACCAG
  GAGGGACGGT TGAACAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51761623	NES14795905	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38485562					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51761623	NES14795905	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88936426 () rs orientation: forward

Symbol	Name	Function Class
Rr634045	regulatory region 634045	337 bp proximal
Rr634046	regulatory region 634046	1592 bp proximal