rs38484132 SNP Detail

Summary

• ID
  rs38484132
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121924897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACTCCC CGGCCCCAGT
  ATGAGATCAT CTAGGACTAA AGACAATCAC ACAGTTTGCA GGTGTGAAAC ACAAGCCTTC
  CATAGCTCAA CAGGCTCTCA GTGGCGAGCT GTGAAATATT CCAACCAATC AAAAGACAGA
  GGACACTCCC CTGGGTGATG CTGACTCTTA CAGAAAACTG ACCTGAGTAG CAACACTCAC
  W
  GGGATTAGCC TAACATGTAT CTGTAATCCC AGCACTCAGG AAGCTACGCA AGAGGATTGT
  GAGTTCAAGG CCAGCTTCAG ATAAATACTC CTGCTACCCA CCCCACTCCG TGTGCCATCC
  TCAGCGTCTC CGGGGCTTCT CAGCCTCCTT CCGCAGTGGC TGGTTATTGA GTCTTGTTCT
  GTTTGGGAGG ACAGGTATAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51021658	NES13907373	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38484132					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021658	NES13907373	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121924897 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm40138	predicted gene, 40138			within coordinates
Gm43158	predicted gene 43158			within coordinates
Rr584240	regulatory region 584240			within coordinates
Rr584241	regulatory region 584241			565 bp proximal
Rr584242	regulatory region 584242			765 bp proximal
Tssr31474	transcription start site region 31474			740 bp upstream