rs38483355 SNP Detail

Summary

• ID
  rs38483355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128128731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAAATTC AGCAAAACCA
  AGGCACAACA GCATAGTGGG ACCAAGAGAA TGGCACTGCT TCTTTCTGCT CCTTTGTAAG
  TCCCTGGTTC TCTGCTGTAC CATCTCTCAC CAAGCTCTGA ATAGTTAGAA AGAACTGTTG
  TCCTGAAGTC CTTCGTACGT CATAATAAAC TTTTGTTAAA ACAACAACAA AGATACTGTG
  R
  GAGTGTGCCT TCTCTAAACT CTGTTCCTGA AAGTCATTCC TTAGAGACAG AAAGGCCAGC
  AAGGTACAGG CATTAGGTCA TCAACTGGGG CTTCTCTCAA ACCCACCCCA GGACATTCCT
  CTTGTCATTC CTTCCTTCCC CTGTTTGACA CAGCAGTTTA TGTCCCTTGG ACTGTCGAGG
  TAGAGAAGGG ACAGGCATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50948037	NES14141715	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G	G	A	A	A		G	A	A	G		G
ss147739320	ENSMUSSNP447840	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss323532978	CHEV_10_127729918	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38483355					SNP	G	G	G	A	G	A	G	G	A	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948037	NES14141715	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128128731 () rs orientation: forward

Symbol	Name	Function Class
Stat2	signal transducer and activator of transcription 2	13 bp downstream
Tssr96388	transcription start site region 96388	363 bp downstream