rs38473508 SNP Detail

Summary

• ID
  rs38473508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86771234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCGC TTTGGGCAGT GTTTGCTCTC
  Y
  AGCCAACCAA AACCTAGGTG GTCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51749413	NES14799922	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	T	C		C	T	T	C		T
ss321847295	CHEV_6_86744246	CHEVERUD	SCREENING_POP	f	SNP								C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38473508					SNP	T	C	C	T	C	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749413	NES14799922	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86771234 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	668 bp upstream
Cpgi17670	CpG island 17670	379 bp distal
Rr633515	regulatory region 633515	679 bp distal
Rr633516	regulatory region 633516	178 bp distal
Rr633517	regulatory region 633517	714 bp proximal
Tssr61864	transcription start site region 61864	670 bp upstream
Tssr61865	transcription start site region 61865	651 bp upstream
Tssr61866	transcription start site region 61866	1440 bp downstream