rs38471747 SNP Detail

Summary

• ID
  rs38471747
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24607382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGCAAG TGCCTAGAAG
  ATAAGTTTCC TCTTCGTATT GTCTTGCTAG ATCTTTGTGA ACCTTAGGAT GACAAAAACG
  ACTTCCAAGG CTTATCGCAA AAGTGGAATA TAGATATGGA CCCTCACAGC TCACCAACCA
  GTATATTGCA AAGTTCAGAA TAAAGGCAAG TATGCTATAG TCAGGTATCC AGCGAGCACA
  Y
  TAATTATTAC AGAGAAACAG GTGGAGAACA CATCCTACCA GGGTCCATCC AGTACTGCAA
  AAAGACAGGG CACCCTGACA GTCATCATTC AACAGCCTGA AATCTCGCAG AGCCAGTGTG
  AAAACTAATT AGTTCATCGT CTATAAAAAG CATTCAGCTC ACCGAAAGAC TGCCCACGAT
  CAGATGAAGC ATTTAGATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51253629	NES13798871	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38471747					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51253629	NES13798871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24607382 () rs orientation: forward

Symbol	Name	Function Class
Lmod2	leiomodin 2 (cardiac)	1969 bp downstream
Rr627250	regulatory region 627250	746 bp distal
Rr627251	regulatory region 627251	90 bp proximal
Rr627252	regulatory region 627252	761 bp proximal