rs38471660 SNP Detail

Summary

• ID
  rs38471660
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152462485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTAAACC CTCCCTTGTG
  TAAGGTGCCT TGGTCATGGT GCTCTAGCAT AGCCACTACT ACATTGTACT TTGTTCAGCT
  TGACGAAATG AGAACTGGTC TACCGACTCT TCATCTCGGT CAGCATTGTT TTGGAATGCT
  TTAAAATGGG ACTAGTTGGC TAGCTTCTAA CTCATTAAAT CTAATGGCCT CAGCTTCTGA
  W
  GTTTTATATA TTCTACTACA GTTTCCCAAG AATTAAAAAA CAAACCAAAC TAATAGATTC
  TAGGAGTTCA TAGACTGTGA TCCCAAGCTA GCTAATGTGT CTCCTGGGAA ACGAATAGGG
  ATGTGGCTGA TTATGCTTCC CCACCGTGGC AGGGGTGGCC CTCATTTACT TGATTAAACA
  GGGATGCAAA CCAGAGACCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51672689	NES14643785	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38471660					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51672689	NES14643785	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152462485 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40181	predicted gene, 40181			1185 bp upstream
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587594	regulatory region 587594			625 bp distal
Rr587595	regulatory region 587595			within coordinates
Rr587596	regulatory region 587596			1709 bp proximal