rs38469130 SNP Detail

Summary

• ID
  rs38469130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:34685104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGCGTGG AATCTTGAGA
  GAGGGGAACT GTTTTGCCTC CAACAGCAAG TCCCGGAATT CTATAAGCAA TAAAAGAGAA
  CAAAGTAACA TTTGGTAGGA AGGAAAGGCA GCAGGTCATC TTGGTATACA TTTTACAGTC
  CATCTCTGGA GAGAAAATGA GATGATCCTG AAGCCTGAAG CCAGTCATGT TGTGTAAAGA
  Y
  AGCCACATCT CAGGTTGTTT CAGTGTCTTC TGCCCTCCAG TTAATAGGTT GAGTGATAAT
  CCACGCAGTC CACAGGATAC ACGTGTAGAA ATAATTACAT TTGGCATTTA CTGACTCATA
  CTTAGCAACT GTGGCACTGG CGACAGCATA GGGGTTAAGC AGGGAAAAAC GTTGTCTAGC
  TATGTGGAAT GAGGAGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51270981	NES13789520	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38469130					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51270981	NES13789520	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34685104 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cald1	caldesmon 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr628363	regulatory region 628363			783 bp proximal
Rr628364	regulatory region 628364			1476 bp proximal
Tssr55522	transcription start site region 55522			1269 bp upstream
Tssr55523	transcription start site region 55523			1304 bp upstream
Tssr55524	transcription start site region 55524			1348 bp upstream
Tssr55525	transcription start site region 55525			1406 bp upstream
Tssr55526	transcription start site region 55526			1441 bp upstream