rs38462124 SNP Detail

Summary

• ID
  rs38462124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8416825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCATAAG ATCCCTCGAA
  TAAACCAATT CATAGGATTA AAAAGAAAAA TATAGTAACG ATTGCTGTGG GCTCAGGGAA
  AGGCCAAATG AGGACTGGTT TATTTAATGG GATGATGACA GTTGTAGCAG TGGGAAGTGG
  TGAGGACTGT AGACCCTGAA GGGCCTTGAT GCCTGTCATT TAGACATTTA ATGGCAGGTT
  Y
  ATACTGTGTA GAGTTTGCTT CAGTAAGAAA GCAATACTGA CCTGAGCTCT CTGTGACATG
  AAATAATAGC ACACTCCTTT GGGTTCCAAG TGTACGCTGA AGGAGCAGCC GGCCTCCTAC
  CATTCTGAAT GGCTCCTTCA TTCTCATACA GGGTGGAAAA ACCACAGCTG TGTTTACTTT
  TCCAACCCCA TCTTCTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51551463	NES14868236	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38462124					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51551463	NES14868236	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8416825 () rs orientation: forward

Symbol	Name	Function Class
1810015A16Rik	RIKEN cDNA 1810015A16 gene	1043 bp downstream
Gm45062	predicted gene 45062	Intron
Rr626392	regulatory region 626392	96 bp proximal
Umad1	UMAP1-MVP12 associated (UMA) domain containing 1	Intron