rs38461773 SNP Detail

Summary

• ID
  rs38461773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:149335747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCTGTCG CAGCTGCTCC
  GCCTACAGCC TGGTGCCTTC CAACTGCGCG GTGAGCAGCT CCTGGTGCCC GGGCCCGGGG
  AACCCGCGGC CGCACGTGGG GGCTTCAACG TCTTCGGGGA CGGCCTTGTG CGCCTAGAAG
  GGCAGCTCTA TCGCCTCAGC AGCTACATCA AGAGGTAGGT GGCCACACCG TGTGCTCTAG
  Y
  CTGGAGCAAA TCCTCTATCT GGCTGCTGCC CTGTCTCTGG TAGACTGGGG ACTGGAGATG
  GAGATAACCT ACCTGCCACC CTACAGCCCG AACCCTCCTC CCCCCAGCCC CCAAGCAGGT
  AACTAGGGCG TTTTGCTGAG AATGTAGGGA GGATCGGGTG GGAAGCACAC TCAGTCCCAC
  CCAACAAGCT GGTGGCAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51207779	NES13811520	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38461773					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51207779	NES13811520	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149335747 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17095	CpG island 17095			within coordinates
Gm20488	predicted gene 20488			within coordinates
Medag	mesenteric estrogen dependent adipogenesis			Intron
				Noncoding-Transcript-Variant
Rr625496	regulatory region 625496			523 bp distal
Tssr49905	transcription start site region 49905			471 bp downstream
Tssr49906	transcription start site region 49906			144 bp downstream