rs38461235 SNP Detail

Summary

• ID
  rs38461235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146888818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTA ATTGATGCTG TCCAAGATCT
  Y
  GTCATCAGTT TTGTTCAACG TAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51050436	NES13900921	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C		C	T	T	C		T
ss136048031	ENSMUSSNP866339	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss321011558	CHEV_3_146846027	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38461235					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51050436	NES13900921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146888818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13926	CpG island 13926	408 bp distal
Gm65492	predicted gene, 65492	within coordinates
Rr375882	regulatory region 375882	482 bp downstream
Rr587132	regulatory region 587132	1783 bp distal
Rr587133	regulatory region 587133	1282 bp distal
Rr587134	regulatory region 587134	447 bp distal
Rr587135	regulatory region 587135	15 bp distal
Rr587136	regulatory region 587136	452 bp proximal