rs38459858 SNP Detail

Summary

• ID
  rs38459858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33969655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGCCTG GTTCCTGTGC
  CACAGAGAGT ACAGCTGTGC ACCCCCACTC CCTTTTGTGT GTCGCGCCCG CGTTGGCCAT
  GATAGCTTTA TTAAATGGTG TGACCCGACC TAGTTCTTGC ACGCGGGGCA CCATCTCCTA
  ATCAAAACCA CAAAGCAGCT GAGCGGGCTG TGAAAAGAAA TCGAGAGCTG CATCTTAAAT
  R
  CCAGATTAAC TGCTGTAGTT GGGGAAGGGG GGGGGGGAGG GGATGACAGG GGTGGGCGTG
  GCTAGAACAA GCCCAGCCCT TCTTTAGAGT AATGGGAGGT GCTGCCGTCA GCGGTCAAAG
  ATCAAAGGGT CCACCATGCT GTCTTTAGAA CATAGTTCTA GCTCTTGGGA CAAGAGGCGT
  GGCAGAGAAT GGCCATGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51592410	NES14853072	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38459858					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51592410	NES14853072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33969655 () rs orientation: forward

Symbol	Name	Function Class
Gm13853	predicted gene 13853	303 bp upstream
Gm67665	predicted gene, 67665	within coordinates
Rr628235	regulatory region 628235	548 bp distal
Rr628236	regulatory region 628236	within coordinates
Tssr60221	transcription start site region 60221	511 bp upstream
Tssr60222	transcription start site region 60222	344 bp upstream
Tssr60223	transcription start site region 60223	300 bp upstream