rs38455646 SNP Detail

Summary

• ID
  rs38455646
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82960703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGCTGA CAGCTTCCTT
  TGTTGATCCC TCTGCTGATC CTTGTGTGTA GCTGATAAGG AGCCATGGGG GCAGGGACAA
  GAGGACATTC TCTCATCTGA CCAGATACGG ATCATAGGAG CGATAGCAAG AAAAGGCTGC
  TTCTCTGCTT CTGTTGAGAC CAACCACCAC AAGCTTTAGG GATGTCTTTG GAGTTCAGGA
  S
  TGGTTCTACA GTGGTCCTGT CAGTATGCTG GACGCGACAG GTGACCAAGA GTGGGTATGC
  TAGCCCTACC TCCTGCTAGT CCTATCAGAG TCTCTTAAGC AGATTGGAAT CTGTAAAGGA
  AGTAAGCGGA GAATCAGATC CACTGACTTG GTTTCTCATT CACAGCAGCA TTGCAGAGGG
  AAGACTCAGC TACTGCAGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss50989850	NES13925171	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	C	C		C	G
ss320820921	CHEV_3_82857318	CHEVERUD	SCREENING_POP	f	SNP								C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs38455646					SNP	G	G	C	G	G	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50989850	NES13925171	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82960703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13295	CpG island 13295	1649 bp proximal
Rr397732	regulatory region 397732	1853 bp upstream
Rr578826	regulatory region 578826	102 bp proximal
Rr578827	regulatory region 578827	501 bp proximal
Rr578828	regulatory region 578828	1636 bp proximal