rs38455426 SNP Detail

Summary

• ID
  rs38455426
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:22041097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCAGGCT GTACAATGCT
  GTCTGGCCAC ATCTTGGAGC TGGGCACATT TCTCGTCCTC CCCTCAGGGA GGGGTTTATA
  GTACAGGCAG TTTTTTCAAA GAGGAACATT TCCTTAAACA GGACACCTTA GGCTTATCTG
  TTGTAGGAGA ACAATTAACA CAAGCTTTGT GAAGATCTGC AATTGAGAAA ACACTGAGTT
  M
  CAAGCCAAGT CCAGTCACTT ACACTGGCAG AGTCCATTCT CAGAGTCATC AGAGGTACGG
  GGTGTTCTCT AGGACTTGGT CCTGGTCCTG AGTTAGCACA GAGGCAAATA GTCCTTGCCT
  AAGAGTTGAT GTTCCAGGAA AAAGTAGATG TGTGGTTGCC AGGATGACTA TCTCCAACTC
  AGCTGGGTTT ATTTTCGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51434030	NES14435592	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38455426					SNP	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434030	NES14435592	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22041097 () rs orientation: forward

Symbol	Name	Function Class
Rr367416	regulatory region 367416	803 bp upstream
Rr367417	regulatory region 367417	1285 bp upstream
Rr574182	regulatory region 574182	within coordinates
Rr574183	regulatory region 574183	576 bp proximal
Rr574184	regulatory region 574184	1355 bp proximal
Tssr32754	transcription start site region 32754	883 bp downstream
Tssr32755	transcription start site region 32755	1324 bp downstream
Tssr32756	transcription start site region 32756	1359 bp downstream