rs38454000 SNP Detail

Summary

• ID
  rs38454000
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:22192531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTCCAG CCAGGTGCCA
  TTTCCTCTAA CAGCTACAGT GGTGGAAACG CTTTGGTAGA GTATGGGTCT CCTATCAGTC
  AGTCAGGGCT CAGCTGCAAG GTGCCATTTC CTCTAACAGC TACAGTGGTG GAAACGCTTT
  GGTAGAGTAT GGGTCTCCTA TCAGTCAGTC AGGGCTCAGC TGCAAGCACA GGTGAAGAAC
  S
  GAGAAATAGC AAAGAATTGG GGCTTTCTTA GTGGTAGAGG CAGGGTAAGG AAAAGCTATT
  TACAGAGCAG TGCAAGTCTG GGATAAGAGG TGATTTGAGA TGCTTTGGAA ATAACTAAAC
  ATGGGGTGAG GGGGTTTCCC TGTTTACTTC ATGTAATGAC ACCTTGAAGC CAGTTGCGGC
  CAAAAGGCAG TTTTCAGTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51433276	NES14434426	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38454000					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51433276	NES14434426	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22192531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574211	regulatory region 574211			within coordinates
Rr574212	regulatory region 574212			1485 bp proximal
Tbl1xr1	transducin (beta)-like 1X-linked receptor 1			Intron
				Noncoding-Transcript-Variant
Tssr843	transcription start site region 843			1697 bp downstream