rs38449923 SNP Detail

Summary

• ID
  rs38449923
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143449131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCTGCA GGATGACCAG
  CAATGGCTCA GAGGAGGAGG TGGTGGCCAC TCAGTAAAAT TGAAACGAGA GGGAACTGGA
  CTAGCTTCTC CTTCCGGTTT AAGAAACCCG AGTCCCATCT ACATGCTTGT TTTTATCCCC
  TGCCCCCCGC AAAAAAAAAA AAAAAAATTG CTTCCACAGC GAAGCTGAGC CACCCTGCTC
  K
  GCTTCATTCC TTAAACTAAG TTATTACAGC TAATACTGTG GTTAATGGTT TCTGGAAAGA
  TGCCGTCTAT CAGCACTGGA GTGTACACAT TTTGGCCCAA ACGTTGAGAA ATCGCAGGTA
  TGTGAGGTAA AGCCTGGGTG TGCCCGCCTG GAGAAAACGG CTCATTAGGA TTAATCTTTT
  ACAGACTGAC TAACATGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51661382	NES14645647	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38449923					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661382	NES14645647	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143449131 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	within coordinates
Gm42705	predicted gene 42705	7 bp upstream
Rr586558	regulatory region 586558	within coordinates
Rr586559	regulatory region 586559	373 bp distal
Rr586560	regulatory region 586560	18 bp proximal