rs38447783 SNP Detail

Summary

• ID
  rs38447783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:55114949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCTGTT CAACCACTAA
  AATAAAATGG CTTTCTTTGT TTTAACTTTG TGTCCTGTCT TCCTCCTACA CTTCCAGGTC
  AGGCCCTTTT ATCCACCCTG GAGTGCAGCT CTCCTCTGTA GAAGTTGTCA ATCATAGAAC
  ACCCTACCAG ACCCGAGGTC AGAAAACACC TCTGTGTTGG GAATCTGATG GCATAGGAAC
  Y
  GCCAGGGCAC AGGCAAACTT GGGAACTAAC TTAGACACCG AGTGCTCAGC CCAGCACCTC
  TCCTCTGGGC TTTTATTTTG CCTGAATGTG AATGAAAAGA CCTGGATTCT TAGCAGTCAG
  CAGAGCATTT GAAGGCCACG TCCCATCTGC AAATCACACT TACTGGTGTT TCGAGTGAAA
  GTCATCGGGG TCTTCCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51222267	NES14304652	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38447783					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51222267	NES14304652	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55114949 () rs orientation: forward

Symbol	Name	Function Class
Gm31418	predicted gene, 31418	687 bp upstream
Gpam	glycerol-3-phosphate acyltransferase, mitochondrial	Intron
Rr549751	regulatory region 549751	676 bp proximal
Rr549752	regulatory region 549752	803 bp proximal
Tssr159853	transcription start site region 159853	649 bp downstream
Tssr159854	transcription start site region 159854	663 bp downstream
Tssr159855	transcription start site region 159855	730 bp downstream