rs38446383 SNP Detail

Summary

• ID
  rs38446383
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85985860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATGATC ACTGGCTACT
  GAAGCTCCAG AGTATCACAG GTATGATAGG ATTTCCCGAT CAAAGTGGGC TACCTCACAA
  GCTATGTGAA ACAAGAGGAG ATGACTGTAG CTCTGTGGAC TGCATCAGGG TTGTCTCATG
  TGAAAGAGCA TGAGGCAGCC CTCCTCCCCT CCTTGTACTC CACGTCAGCC CTTCAGATTG
  K
  CCAGTCCTGC AACCATGTTG TCCTGATGGC CAATCATCCT GACTGAGCAC TATGACCACC
  AATCACAGCA CAGTACACTA TGAGTCTGTC TGGCCTAGGG AGGGTCTGCT TGCCTGAACA
  TGTTTCCTGG AAGTCTGGAA TTGCTTTGAA GCTGTAATGA CCTTACTGCA GAAGGTAGTG
  CTTGCTTCTG TCCAGCAATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51757828	NES14802205	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38446383					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51757828	NES14802205	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85985860 () rs orientation: forward

Symbol	Name	Function Class
4930553P18Rik	RIKEN cDNA 4930553P18 gene	within coordinates
Gm33319	predicted gene, 33319	969 bp upstream
Gm66378	predicted gene, 66378	within coordinates
Rr633312	regulatory region 633312	1166 bp proximal
Rr633313	regulatory region 633313	1262 bp proximal