rs38434558 SNP Detail

Summary

• ID
  rs38434558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82938913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACCTCTTC TGGCACAAGC ACCACACATC GTTCATGCTC
  TAAAACCATT ACCAAGACTG TCACAGGTCC TGATGGTCGC CGAGAAGTGG TCAAAGAAGT
  R
  ATCACCTCGG ATGATGGCTC AGACTGTGGC GATGCCACCG AGTTAGACAT ATCCCACAGT
  TTTAGCGGCA GTCTCGACGA ACTCTCTGAA AGGCATCCTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50990074	NES13925802	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38434558					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50990074	NES13925802	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82938913 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Coding-Synonymous
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	92 bp upstream
Tssr29668	transcription start site region 29668	1397 bp downstream
Tssr29669	transcription start site region 29669	1347 bp downstream
Tssr29670	transcription start site region 29670	1310 bp downstream
Tssr29671	transcription start site region 29671	761 bp downstream
Tssr29672	transcription start site region 29672	668 bp downstream
Tssr29673	transcription start site region 29673	621 bp downstream
Tssr29674	transcription start site region 29674	587 bp downstream
Tssr29675	transcription start site region 29675	581 bp downstream
Tssr29676	transcription start site region 29676	567 bp downstream
Tssr29677	transcription start site region 29677	552 bp downstream
Tssr29678	transcription start site region 29678	477 bp downstream
Tssr29679	transcription start site region 29679	418 bp downstream
Tssr29680	transcription start site region 29680	394 bp downstream
Tssr29681	transcription start site region 29681	292 bp downstream
Tssr29682	transcription start site region 29682	261 bp downstream
Tssr29683	transcription start site region 29683	230 bp downstream
Tssr29684	transcription start site region 29684	191 bp downstream
Tssr29685	transcription start site region 29685	145 bp downstream
Tssr29686	transcription start site region 29686	56 bp downstream
Tssr29687	transcription start site region 29687	3 bp downstream
Tssr29688	transcription start site region 29688	9 bp upstream
Tssr29689	transcription start site region 29689	35 bp upstream
Tssr29690	transcription start site region 29690	65 bp upstream
Tssr29691	transcription start site region 29691	111 bp upstream
Tssr29692	transcription start site region 29692	127 bp upstream
Tssr29693	transcription start site region 29693	158 bp upstream
Tssr29694	transcription start site region 29694	191 bp upstream
Tssr29695	transcription start site region 29695	217 bp upstream
Tssr29696	transcription start site region 29696	230 bp upstream
Tssr29697	transcription start site region 29697	254 bp upstream
Tssr29698	transcription start site region 29698	391 bp upstream
Tssr29699	transcription start site region 29699	473 bp upstream
Tssr29700	transcription start site region 29700	486 bp upstream
Tssr29701	transcription start site region 29701	518 bp upstream
Tssr33800	transcription start site region 33800	483 bp upstream
Tssr33801	transcription start site region 33801	120 bp upstream
Tssr33802	transcription start site region 33802	within coordinates