rs38427219 SNP Detail

Summary

• ID
  rs38427219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151796095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCCAATC TTTGATTTCT
  TTAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAACTTTTAA GCCATCCTGG
  GAAGAACACA TAGAGCAATG AGTGCACTAT TAAATACAAA GTCCTAGCAT AGTCGTTACT
  CACTTCAGTT TTCCTCACCT AAAGAACCAA GTACTTTTGC ATCTAAAATC CACCATCTGA
  Y
  AATCTAAACC TGCTGGTTAG CCTGGCCTCG AGGAGGCGGC TCTTTGTTCG GGTAGTGAGA
  GCTGTTAGCT GAGTCTACAG CCTTGCTTTC TGGGCCCTCA TTCCCTACAG CTTTCCTTGG
  TTGGGTGATG TACACTTCAC ATTGTTCCCG TAAAACGTTA ACAGAGTCGG CTTTGCAGAG
  AGCTGAGAAT TTGACTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51060808	NES13430479	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs38427219					SNP	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060808	NES13430479	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151796095 () rs orientation: forward

Symbol	Name	Function Class
Gm31881	predicted gene, 31881	within coordinates
Rr587443	regulatory region 587443	936 bp distal
Rr587444	regulatory region 587444	1032 bp distal