rs38424130 SNP Detail

Summary

• ID
  rs38424130
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119742612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGTCTC CACCTCCATC
  CCCCTCCTTC AGGCTTCATC TTTCTTTTCT AGCACAATGA GGATTTAAGA GAGACAGGAC
  AAGAATCCCC TCCTAAGGCT GGGTGGCCAG AAAAAAGTTT TAGGCTTTTA TTTTACTTTG
  TATTTGTTTG TATGTTTGTT TATTTTGGTT TGGTTTTTGC CTTTTCCCAT GGAGGACATT
  M
  ATGGAAAGTG ATGCGAGATT TTAGATCTTT GGAGCTTTGC CTCATTAGAG AAGCTCCAGC
  ATTCTCTCCA AGTTCCGGCA CTTCTGGCTT CCATCACTTG CACAAACACT GAGAACAAAC
  AAGCCCCCTG CCCCGCCCCC AAATCCATCT CTGCTAGCAG CTCGCAAGCA TCTCCTTCTC
  TCTCCCAGGG CTTTCTCCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51014246	NES13912276	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38424130					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014246	NES13912276	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119742612 () rs orientation: forward

Symbol	Name	Function Class
Gm65304	predicted gene, 65304	within coordinates
Rr583954	regulatory region 583954	1396 bp distal
Rr583955	regulatory region 583955	within coordinates
Rr583956	regulatory region 583956	319 bp proximal
Rr583957	regulatory region 583957	1820 bp proximal