rs38422985 SNP Detail

Summary

• ID
  rs38422985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:79998212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGCAGC CCTTGTGTGT
  AGTCAGTATG TAATTCAGGG AGAACAAACT TCTACAGCAT CCCGGAAGCT CTTTTGCTAA
  ATCACAGCCT GTTAGCTCAA CTAGGAAAGA GATGCCAGAA CCAGGTGTCC TAAGTCATGG
  TTCTGACCTT ACCAAAGGAT GCAGTATAGT TCTGTTCAGT ACTATGGGTC GATACAGTGA
  Y
  ATCCAAATGT TATTGTTAGT CAAATGTCAG CATTCAATGA AAAGCAATGC CAGAGCGTTT
  CAGGGTTGGG ATAGAGTAGC ACTCTGGAAA CTCAGAGAGG TTTTTTTCAC AGATCTATAG
  TTCTGTGATG TTATGAGACT AAGGAGGAAA GAATGAGGTC TAAGCAGCAA GCATGGAGCA
  CTAAAGGAAG TAAGATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51705486	NES14809930	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38422985					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51705486	NES14809930	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79998212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17566	CpG island 17566	1625 bp proximal
Gm4409	predicted gene 4409	within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4	Intron
Rr632528	regulatory region 632528	1576 bp distal
Rr632529	regulatory region 632529	951 bp distal