rs38421221 SNP Detail

Summary

• ID
  rs38421221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69766950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTGCTGG CAGCTGACTC
  CTGTGTGCCA CTGCCTAAAG TAACCCAAAG AGAGAGAACT AAATGAATAT TACCACCTAA
  AGAAGGAAGC CACACGCATC TCAAGATATT TCCTTGAATA TTAACAAACC GTACAAATGA
  ATGAATGAAT AATGAAAATA ATGTAAAACA TTTTTTTTCT TCTGCCTGAA AAAGTTCCAA
  Y
  AATAAAGTTT GGCTTCTGTT GAGAAAAGCA TCTTAGTTTC CAACATAGTA AATGCCAAGA
  GGAACCGTTC AATTCTTAGA GTTGTAATAT AGTTAAATAA GAAGCAGATA AATTGCATTA
  AAGCTCAGTT CTAGTTTCCC CCCATGCAGA CAGAAACTCT GTGCTATGAA AGCTCCTTTT
  AGATTGGACG TAGGTAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss50977792	NES13927104	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs38421221					SNP	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977792	NES13927104	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69766950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	590 bp proximal
Rr578229	regulatory region 578229	116 bp proximal
Rr578230	regulatory region 578230	295 bp proximal
Rr578231	regulatory region 578231	635 bp proximal
Rr578232	regulatory region 578232	695 bp proximal
Rr578233	regulatory region 578233	1696 bp proximal
Rr578234	regulatory region 578234	1814 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Intron
Tssr903	transcription start site region 903	238 bp downstream
Tssr33557	transcription start site region 33557	743 bp upstream
Tssr33558	transcription start site region 33558	258 bp downstream
Tssr33559	transcription start site region 33559	1757 bp downstream