rs38418585 SNP Detail

Summary

• ID
  rs38418585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:23010974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGCTAGA AGAGAATTGA
  AAATAGGTAT ACAGATTCTA ATAATAGTTT AGTTGCTGTA TTTTGCAGTG TCATGTCAGC
  TGTCTATTCA AATATTGGTA AGAGTTGTGA TGAATTTGTC CCAGTAGACA GTCCTGCCTC
  ATTCAGGTCT CTGTCAGGGG GTGGGGGATT ACATCTCTAC CAATTACTTT TAATTGTTCT
  R
  TTTTAACAGC AAAAGCCATG CTCAAGTATT CAGCAACTGG AGGTCAACAT TTTTTGGGAA
  AATGTCTTTT TATATTTTTT TCTCTTATTA TTTTCAAACA GTTCCTGTCC TCATCTATAC
  CATGCAAGTC AATAGCACAA GCTTCATTTA TCATGATGCA CATTGTACAG ACACTCGGTA
  TTATATTCAC CATGAATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51439424	NES14444071	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38418585					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51439424	NES14444071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:23010974 () rs orientation: forward

Symbol	Name	Function Class
Rr574243	regulatory region 574243	481 bp distal