rs38416554 SNP Detail

Summary

• ID
  rs38416554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:96980418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT GCTAGTGACA GGCAAGAACA
  R
  CCCTGTTACT GAAGAGGAAT TAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss51918045	NES14941047	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	G	A
ss145438034	ENSMUSSNP1096097	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs38416554					SNP	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51918045	NES14941047	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96980418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kctd21	potassium channel tetramerisation domain containing 21			1116 bp upstream
Rr400445	regulatory region 400445			880 bp upstream
Rr651401	regulatory region 651401			1671 bp distal
Rr651402	regulatory region 651402			within coordinates
Rr651403	regulatory region 651403			799 bp proximal
Rr651404	regulatory region 651404			1101 bp proximal
Rr651405	regulatory region 651405			1127 bp proximal
Tssr67964	transcription start site region 67964			1100 bp upstream
Tssr67965	transcription start site region 67965			1427 bp upstream
Tssr73573	transcription start site region 73573			806 bp downstream
Tssr73574	transcription start site region 73574			892 bp downstream
Tssr73575	transcription start site region 73575			905 bp downstream
Usp35	ubiquitin specific peptidase 35			Intron
				Noncoding-Transcript-Variant