rs38411566 SNP Detail

Summary

• ID
  rs38411566
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:98080748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGGTTTC TTGCTCTTCT
  TTAATATGCA GAGGTGCATA GTCCCAGTGG CAGCAGCCAC GAGTACCTTG ACAGTCAGCC
  CTTCTCATGA TGCCCATCGG TGTTCTTCCT TTATCGAGTT CAGATCTGTG GGCTTCCTCC
  AGAAACACAG CCACAATTGA GTTGCTTAGC ACTGTATTGG TCTGTTTCAT GCTGCTATAA
  M
  AAAATACCTG AGGTTGTGTA TTTGTTTTTT TTTAAAGCCT ATAGTTTTGG AGATAACCTG
  TTTGTCTCGT AAAGGACCTT CAGTGACATG AAAACAAACA AATATAAACA CAAAACTTAA
  GGTCTGTGTT TTGTTTACTT TTTAATAACA GCTCACTCTC AAAAGAACTA ACTGAGGTCT
  TATGAGAGCT ACATCAATCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51380891	NES13737593	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38411566					SNP	A	A	A	A	A	C	A	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380891	NES13737593	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98080748 () rs orientation: forward

Symbol	Name	Function Class
Rr379828	regulatory region 379828	323 bp downstream
Rr635261	regulatory region 635261	837 bp proximal
Rr635262	regulatory region 635262	1499 bp proximal
Rr635263	regulatory region 635263	1625 bp proximal