rs38411545 SNP Detail

Summary

• ID
  rs38411545
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143853731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTACAGGG TAGGGTATTT
  CCTAAGGAAG TCCTCTTCCC CATCACCTAG ACTCAGCGCC AGAAGATTAA CCCAAATCAT
  CCACAGCTTG CCAAATCGGT GTTCAAGGCT AGGTGAGGCA GTTGGTGGGT ATGTCTCTTG
  ACATCTGGTC ATCACTACAA TGACTGACAT CACTACAATG ACTGACAGCA GGTGACCTTT
  K
  AAGCAAGCCC TGGTCCCTGC AAGCTCTTCT GGATGCTTGA TCTCTTCTCA TTCCAGATTT
  TTGCCTCTTT GGGGTTCCAC AGTTGATACG ATTGATGGAG AATTAATTTT TATCTCTTTA
  ACATAGAAAT CATCCTGTAA AATGAAGGCC AACTTGACTT TCTCCAGTTT GCATCTCCGG
  GAGCATCCTA CTTCTTTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51656075	NES14644064	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38411545					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51656075	NES14644064	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143853731 () rs orientation: forward

Symbol	Name	Function Class
Rr586587	regulatory region 586587	535 bp distal