rs38407875 SNP Detail

Summary

• ID
  rs38407875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108450411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGAGAGA GGAGATGGTG
  GCTTTCTGGA TTGTTTTTTC CAAGTGTACA GATCTCTCAC AAAGGCGGGA ATCTGGGCTT
  CTGGCTGGTA TATAAGATAT AGAAAATAGA ACTTCTGAGG ATGTAGCAGT ATTAACTATC
  ACAAGTTTGC CTTTTAGCCA AAGAGCCCAC AACACAGATA ACAGAAGAGG TCCGGGATCA
  R
  CTCCTGGAAG CATCTGCTGC CACCAGGAAA GCCTTTACCA CCTTCCGGAG GGAGGCCGAC
  CCTGATGACC ATTACCAGTC TGGGGAGGGC ACCCAGGCTA CAACCGACAA AGCCAAGGAT
  GACCTAGAGA TGAGCGCTGT CATCACCATC ATGCAGCCTA TCCTGCGCTT CCTGCAGCTG
  CTGTGTGAAA ACCACAACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51813713	NES14768564	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38407875					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51813713	NES14768564	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108450411 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	844 bp upstream
Gm44101	predicted gene, 44101	875 bp upstream
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Coding-Synonymous
Rr636115	regulatory region 636115	1235 bp distal
Rr636116	regulatory region 636116	806 bp distal
Rr636117	regulatory region 636117	253 bp distal
Tssr58061	transcription start site region 58061	407 bp downstream
Tssr58062	transcription start site region 58062	368 bp downstream
Tssr58063	transcription start site region 58063	349 bp downstream
Tssr58064	transcription start site region 58064	322 bp downstream
Tssr62385	transcription start site region 62385	1786 bp upstream
Tssr62386	transcription start site region 62386	901 bp upstream