rs38407402 SNP Detail

Summary

• ID
  rs38407402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32458046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCCAGGA ACAATGCCTC
  CCTGCCACAG GGACCCAGAG GGCTGCTCAG CTGAGTCACA TGGCCTCTTC TTCCCTAGGA
  TACACACACA CACACACACA CACCACTCCC ACTCCCACCC AGCCCCATAA GGGCTGGCTA
  AGGCATCTAT TTGGAGCTTC TGATTGTCCC CTGGTTATGC TGACCTCTGA GGATTTCCTA
  Y
  ACTCTGCTGT CCTACCTCAC CCCAATTCAC ACGGCTGTTC ATATCCCTGA AGGTTGAAGT
  TGCTCCTTAG AGCTATACCA TACAAAGAAA GTCAGAGATA TTTGCTATCC TCTTTTATAT
  TTTCTCCTGC TGTATAAAAA GCAAACAAAC AGTCTACAGG GTCTGGGGAG TAGTGAAGAG
  TGCATGGCAT GCAAGCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51580476	NES14853913	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38407402					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51580476	NES14853913	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32458046 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628114	regulatory region 628114	1061 bp distal
Rr628115	regulatory region 628115	1594 bp distal
Rr628116	regulatory region 628116	within coordinates