rs38406486 SNP Detail

Summary

• ID
  rs38406486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:59013753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATGTGG CACATATACA
  CAGTGGACTA TTACTTGGCT GTTAAAAACA AAAGGCTAAG TAACTAGGAG GGCGTAAGGG
  TAGATGCAAA AATTCTCCTG GGAAAGGGGA ATAGAAAGTC AGGCTCTAAG TAAGAAGTAT
  CTACCAGACT TCAAAAATTC AGAAGAGCCT TGGCTGAGAC TCAAGGCTAT AGGAGGTGGA
  Y
  TGGAGAGACA CATCAACTAC AGGTGACTTC CTGAGAAGAG TGCCACAACT ACTGGGAAAA
  GTCTGTTCTT CTGAACTAGG GGTGTGTGTG TGGGGACAAT GGCATAATTT ACAGTTCCTC
  AGTCCTTTGG TGTCATGGCA GATTTCATCA ATTCTTCATC TTGGGATGCT GAGGATTATG
  CTGAAAATAA GACTCTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51665178	NES14830109	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38406486					SNP	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665178	NES14830109	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:59013753 () rs orientation: forward

Symbol	Name	Function Class
Gm19165	predicted gene, 19165	121 bp upstream