rs38406377 SNP Detail

Summary

• ID
  rs38406377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118353597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTGTGC ACATTATTTT
  TCAATATTTG AACATGTATG TATCTTTGCT GGTACTTATG ATTATCTATG ATGGCTATGT
  ATCTCCACAA GGACATGGTT GACTTTAGAG AAATGGTAAT AATTTGGAGG TAAGTTTGGA
  TCCTGGGAAC TAGAGGAGAA TTTGCCCTTA GACTATACTC CTGAATATAG AAGTAGTTAC
  R
  ATGAGCTATT TTAATCACAG ATTTGTTGAT TGATACTGTG ACTCATTCTC CACAATGGAG
  AGAAACTACA GTTTTTCCAA AGCATTTTTA AATGCAGAAT CTCCTGTCCC TTTAGTCAGT
  AATTCTTGTA TGTTTCAAGC CCAGACAAGG AACAACATGT TCAGTAGACA GCGAAGTCAG
  ACACTGATCC TGTTTATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51603656	NES14666211	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38406377					SNP	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51603656	NES14666211	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118353597 () rs orientation: forward

Symbol	Name	Function Class
Rr583905	regulatory region 583905	1715 bp proximal