rs38405888 SNP Detail

Summary

• ID
  rs38405888
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84552405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGATCA AGGATGTGCT
  TGCACTGGCC GTCGTGGCGT AGGCTGCGAA GATCAACTCC AGGGTTCCAT CCTGCACAGT
  AAGAAGATAG GCATTCTGGA CCCTTTGCAG CAGTCACTCA GGCTGACCTT TGCTGCTAGC
  TTTCCCCAGA GCCCTACTGC TAACAGTGTT GCTCTGAGCC TTACTCTCAA AAGGCTCATG
  K
  AGGTCACAGC CTGGTCCCTA GCTCGGGTGG AAACACACTG CTGTGACTCA GGCAGAAGTA
  TAAGCCTGCT GGCTCCAGAG CTTAAGGTTA CTTCTTGCTC AGTGCTAGAT TCCTGGCCAG
  CACCAGCAGG CCTACTTAAT GCAGTGAGCT CATGGAAGAC AAAGGATACA GTCAGACGCT
  CAGCACTGTG TGTGTTTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51731929	NES14800490	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38405888					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51731929	NES14800490	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84552405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17625	CpG island 17625	797 bp distal
Cyp26b1	cytochrome P450, family 26, subfamily b, polypeptide 1	Intron
Rr633066	regulatory region 633066	1307 bp distal