rs38401754 SNP Detail

Summary

• ID
  rs38401754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18438559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTAAAGA ACATTTAGTG
  GTCCACAAGG GGTTTCATGG TTTATAGAAG TTAAAGTGTA TTTAGCTGTT TTGAGATAAA
  GAGCATTTTA TCTTTTCTAG ATGCTAAAAA CAAACATGGG AAGGAACTTC CTGCATTTTG
  TATTCACAGC TATAGTGTGA TTTTACCAAT TGAAGATCTG TGGCAATCCT GCATCAAGCA
  R
  CATTATTAAG GAAATCATTT CTTCCTCCCC CAGTAGCTCC AATAATAACA ATTTCAAGTT
  GTAGACAGTC TTTTTTTAGA CACAATACAA CTTATAAGAC TAGAGTGCAT CATAAAAAGA
  CTTGCATTCA TTGCAAAATC AAAAGACTTC TGTTACTTCA GTATTGTCTA TAGTTTAGTG
  GTTTAGACAC AAACTTTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	WSB/EiJ
ss51250465	NES13802044	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	WSB/EiJ
rs38401754					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51250465	NES13802044	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18438559 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Rr626924	regulatory region 626924			1847 bp distal