rs38397067 SNP Detail

Summary

• ID
  rs38397067
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86972835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGTGAGG TGATGCTTGC
  TCTTCAGTCT GTGTGCATTT ACCTTGCTTG ACTTGTTTAT TTTTCTGTTT TTCCATTGTC
  AACATCCATC CTTTGGTTCC ACGATGTGTC TGCTCCGTTG AACATTAAAT GTTCCAAAAA
  GCTCTGGACC AGCATCCACA TTAATTCTGA ATTTTATGCT TTTCTAGGTC TCCAGAGAGA
  K
  CCCAGTCCTT GTCCTGTAAT TACTGTAGAG CACTTTAAAG AATCCATGGG CACCAAAGGC
  CTTCCCCTCT ACCCAGATCC CTGCAGAGCT CCTGGCACAA AGACTCAGAA CACCTTAGCA
  TCTGATTCTC TGGCCCGAGA GGGTCCTTCC AGCAACAGCT CCTTCCACAG CAGTGAGGAG
  GAGGGGACTG ACCTGGAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51746638	NES14796011	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38397067					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51746638	NES14796011	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86972835 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr633570	regulatory region 633570			918 bp proximal