rs38396680 SNP Detail

Summary

• ID
  rs38396680
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108429210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCCTGT TTGATCTCCC
  AGTAGTTTTC GGCCAGGATT CAGTTACAAC TTCCATTCAG CCAGGGAATT GCTAGTCAAT
  AATATGTATA GAGCAGCCTA GCACGGGTTG GAATGGGACA GAGAAACAAG TTCTCATCTT
  TGGAGCTCAT CCTCTCGGAC ACCTTGCTGT GCACCCTACC TGCCTTGACG GCATGATGCC
  W
  GAGTTGGATG CTTTCCCCAT ACAGCAGCAG GACAGCCCTT CCATAGCTAC CATGTCTTTC
  TTAGCATTAT TGTCAGTGAC ACTTCCTAAG AGAAGCCTGG TCATCTTGTC CCCTGTCTTC
  AAAGTCTCCC TTAGAGAACA GACTCGATTG ACACTCTGGT GATGTCTTTG GATGCCCTGT
  AAAATGGGGC ACTGCCTAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51814025	NES14768872	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T		A		A	T		T
ss133502646	ENSMUSSNP417829	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						A
ss321892728	CHEV_6_108402243	CHEVERUD	SCREENING_POP	f	SNP									T			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38396680					SNP	T	T	T	A	T	T	A	A	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51814025	NES14768872	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108429210 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636110	regulatory region 636110	1637 bp distal
Rr636111	regulatory region 636111	1394 bp proximal