rs38390190 SNP Detail

Summary

• ID
  rs38390190
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121890999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCACAT TCAAAGCAGT
  TTCTTCCTCC TGACCTCATA AAGAAAGTTT GGTGAGGGTA ATGTGATATT TGTGTTTGGT
  TTTTATAAAA CCTTCCCCTG GGCAGCAGCA GCTGGAAGTC CCCCACTGGC CGATGGGCAG
  CTAGTAGATA CCACCCTCTC TACCCCATTG CCCAGGTGGC CTTGGCTTCC GGCCACAGCA
  K
  TGTTCTGGCC AGATGGAACG CTGTGGAGTA TTAGCTCAGG ACAGTCCGTG TCCTCACACA
  GATTATTTGA AGAAAATAAC TGCTCGCCTG CCCTGGTGAA CAACTGTCAT TAATGAAGAC
  TAACCGTGGC AGGAACTTGA GAGGCGCTTG GTTATTGACG TTCAAAGATA TTTTACAAAA
  ACAAGAGTAA AATGGTATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51021988	NES13908012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38390190					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021988	NES13908012	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121890999 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr584230	regulatory region 584230			within coordinates